2024

1. de Paiva Gonçalves, J., Gasparini, K., Picoli, E. T., Costa, M. D. B., Araujo, W. L., Zsögön, A., & Ribeiro, D. M. (2024). Metabolic control of seed germination in legumes. Journal of Plant Physiology, 154206.

2. Andrade, M. T., Cardoso, A. A., Oliveira, L. A., Pereira, T. S., Haverroth, E. J., Souza, G. A., … & Martins, S. C. (2024). Enhanced drought resistance in tomato via reduced auxin sensitivity: delayed dehydration and improved leaf resistance to embolism. Physiologia Plantarum, 176(3), e14408.

3. Mota, T. A., Almeida, C. S., Souza, G. A., Teixeira, L. S., Araújo, W. L., Nunes-Nesi, A., … & Ribeiro, D. M. (2024). Selenium mitigates the loss of nutritional quality in rice grown at an elevated concentration of carbon dioxide. Chemosphere, 362, 142692.

4. Gasparini, K., Figueiredo, Y. G., Araújo, W. L., Peres, L. E., & Zsögön, A. (2024). De novo domestication in the Solanaceae: advances and challenges. Current Opinion in Biotechnology, 89, 103177.

5. Batista-Silva, W., de Paiva Gonçalves, J., Siqueira, J. A., Martins, A. O., Ribeiro, D. M., Nunes-Nesi, A., … & Araújo, W. L. (2024). Auxin metabolism and the modulation of plant growth. Environmental and Experimental Botany, 105917.

6. Siqueira, J. A., Martins, A. O., Wakin, T., Silva, M. F., Batista‐Silva, W., Brito, F. A., … & Araújo, W. L. (2024). The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf‐Specific Regulation of Wild Tomato Species. Plant, Cell & Environment.

7. Figueiredo, Y. G., Gasparini, K., Bulut, M., Fernie, A. R., & Zsögön, A. (2024). The genetic basis of prickle loss in the Solanaceae. Trends in Plant Science.

8. Gasparini, K., Delgado-Santibañez, P., Zsögön, A., & Ribeiro, D. M. (2024). Moving abscisic acid transport forward. Trends in Plant Science.

2023

1. Gasparini, K., Gasparini, J., Therezan, R., Vicente, M. H., Sakamoto, T., Figueira, A., … & Peres, L. E. (2023). Natural genetic variation in the HAIRS ABSENT (H) gene increases type-VI glandular trichomes in both wild and domesticated tomatoes. Journal of Plant Physiology, 280, 153859.

2. Cerqueira, J. V. A., Zhu, F., Mendes, K., Nunes-Nesi, A., Martins, S. C. V., Benedito, V., … & Zsögön, A. (2023). Promoter replacement of ANT1 induces anthocyanin accumulation and triggers the shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research, 10(2), uhac254.

3. Parma, D. F., Souza, K. F., Vaz, M. G., Martins, S. B., Araújo, W. L., Zsögön, A., … & Nunes-Nesi, A. (2023). Exploring the diversity of sexual systems and pollination in Brazilian Cleomaceae species. Flora, 300, 152245.

4. Siqueira, J. A., Batista-Silva, W., Zsögön, A., Fernie, A. R., Araújo, W. L., & Nunes-Nesi, A. (2023). Plant domestication: setting biological clocks. Trends in Plant Science, 28(5), 597-608.

5. Zuccarelli, R., Rodríguez-Ruiz, M., Silva, F. O., Gomes, L. D., Lopes-Oliveira, P. J., Zsögön, A., … & Freschi, L. (2023). Loss of S-nitrosoglutathione reductase disturbs phytohormone homeostasis and regulates shoot side branching and fruit growth in tomato. Journal of Experimental Botany, 74(20), 6349-6368.

6. Siqueira, J. A., Zsögön, A., Fernie, A. R., Nunes-Nesi, A., & Araújo, W. L. (2023). Does day length matter for nutrient responsiveness?. Trends in Plant Science, 28(10), 1113-1123.

7. Ahn, E., Botkin, J., Curtin, S. J., & Zsögön, A. (2023). Ideotype breeding and genome engineering for legume crop improvement. Current Opinion in Biotechnology, 82, 102961.

8. Cerqueira, J. V. A., De Andrade, M. T., Rafael, D. D., Zhu, F., Martins, S. V., Nunes-Nesi, A., … & Zsögön, A. (2023). Anthocyanins and reactive oxygen species: a team of rivals regulating plant development?. Plant Molecular Biology, 112(4), 213-223.

9. Haverroth, E. J., Oliveira, L. A., Andrade, M. T., Taggart, M., McAdam, S. A., Zsögön, A., … & Cardoso, A. A. (2023). Abscisic acid acts essentially on stomata, not on the xylem, to improve drought resistance in tomato. Plant, Cell & Environment, 46(11), 3229-3241.

10. Pimenta, T. M., Souza, G. A., Brito, F. A., Teixeira, L. S., Arruda, R. S., Henschel, J. M., … & Ribeiro, D. M. (2023). The impact of elevated CO2 concentration on fruit size, quality, and mineral nutrient composition in tomato varies with temperature regimen during growing season. Plant Growth Regulation, 100(2), 519-530.

11. Vicente, M. H., MacLeod, K., Zhu, F., Rafael, D. D., Figueira, A., Fernie, A. R., … & Peres, L. E. P. (2023). The ORGAN SIZE (ORG) locus modulates both vegetative and reproductive gigantism in domesticated tomato. Annals of Botany, 132(7), 1233-1248.

12. Del Giúdice, L. Z., Falquetto-Gomes, P., de Almeida Costa, P. M., Martins, A. O., Omena-Garcia, R. P., Araújo, W. L., … & Nunes-Nesi, A. (2023). Dynamic shifts in primary metabolism across fruit development stages in Capsicum chinense (cv. Habanero). Journal of Plant Physiology, 291, 154121.

2022

1. Moreira JdR, Quiñones A, Lira BS, Robledo JM, Curtin SJ, Vicente MH, Ribeiro DM, Ryngajllo M, Jiménez-Gómez JM, Peres LEP, Rossi MM, Zsögön A. SELF PRUNING 3C is a flowering repressor that modulates seed germination, root architecture and drought responses. Journal of Experimental Botany 73: 6226-6240

2. Brito FAL, Pimenta TM, Gasparini K, Zsögön A, Ribeiro DM. Crop exposure to salinity stress under elevated CO2: responses in physiological, biochemical, and molecular levels. pp. 73-89 In: Liu, Li, Hogy, Jiang, Brestic, Liu (eds.) Sustainable Crop Productivity and Quality Under Climate Change: Responses of Crop Plants to Climate Change. Academic Press, Cambridge, MA

3. Zsögön A, Peres LEP, Xiao Y, Yan J, Fernie AR. Enhancing crop diversity for food security in the face of climate uncertainty. Plant Journal 109: 402-414

4. Curtin S, Qi Y, Peres LEP, Fernie AF, Zsögön A. Pathways to de novo domestication of crop wild relatives. Plant Physiology 188: 1746-1756

5. Rodrigues-Salvador A, Lana-Costa J, Omena-Garcia RP, Batista-Silva W, Scossa F, Rosado-Souza L, Pérez-Díaz JL, Menezes-Silva PE, DaMatta FM, Sulpice R, Araújo WL, Zsögön A, Fernie AR, Nunes-Nesi A. Metabolic shifts during fruit development in pungent and non-pungent peppers. Food Chemistry 375: 1318505

6. Vendemiatti E, Therezan R, Vicente MH, Pinto MdS, Bergau N, Yang L, Bernardi WF, Alencar SMd, Zsögön A, Tissier A, Benedito VA, Peres LEP. The genetic complexity of type-IV trichome development reveals the steps towards an insect-resistant tomato. Plants 11: 1309

7. Moreira JdR, Rosa BL, Lira BS, Lima JE, Correia LNF, Otoni WC, Figueira A, Freschi L, Sakamoto T, Peres LEP, Rossi M, Zsögön A. Auxin-driven ecophysiological diversification of leaves in domesticated tomato. Plant Physiology 190: 113-126

8. Pimenta TM, Souza GA, Teixeira LS, Zsögön A, Ribeiro DM. Action of high concentration of carbon dioxide on size and ripening of tomato fruit. Scientia Horticulturae 304: 111345

9. Pino LE, Lima JE, Vicente MH, de Sá AFL, Pérez-Alfocea F, Albacete A, Costa JL, Werner T, Schmülling T, Freschi L, Figueira A, Zsögön A, Peres LEP. Increased branching independent of strigolactone in cytokinin oxidase 2-overexpressing tomato is mediated by reduced auxin transport. Molecular Horticulture 2: 12

10. Naves ER, Scossa F, Araújo WL, Nunes-Nesi A, Fernie, AR, Zsögön A. Heterosis and reciprocal effects for agronomic and fruit traits in Capsicum pepper hybrids. Scientia Horticulturae 295: 10821

11. Batista-Silva W, Oliveira ACD, Oliveira AM, Siqueira JA, Rodrigues-Salvador A, Omena-Garcia RP, Medeiros DB, Peres LEP, Ribeiro DM, Zsögön A, Fernie AR, Nunes-Nesi A, Araújo WL. Reduced auxin signalling through the cyclophilin DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of Experimental Botany 73: 4113-4128

12. Andrade MT, Oliveira LA, Pereira TS, Cardoso AA, Batista-Silva W, Damatta FM, Zsögön A, Martins SCV. Impaired auxin signaling increases vein and stomatal density but reduces hydraulic efficiency and ultimately net photosynthesis. Journal of Experimental Botany 73: 4147-4156

13. Siqueira JA, Wakin T, Batista-Silva W, Silva JCF, Vicente MH, Silva JC, Clarindo WR, Zsögön A, Peres LEP, De Veylder L, Fernie AR, Nunes-Nesi A, Araújo WL. A long and stressful day: Photoperiod shapes aluminium tolerance in plants. Journal of Hazardous Materials 432: 128704

14. Zhu F, Ahchige MW, Brotman Y, Alseekh S, Zsögön A, Fernie AR. Bringing more players into play: Leveraging stress in genome wide association studies. Journal of Plant Physiology 271: 153657

2021

1. Zsögön A, Peres LEP, Xiao Y, Yan J, Fernie AR. Enhancing crop diversity for food security in the face of climate uncertainty. Plant Journal

2. Rodrigues-Salvador A, Lana-Costa J, Omena-Garcia RP, Batista-Silva W, Scossa F, Rosado-Souza L, Pérez-Díaz JL, Menezes-Silva PE, Damatta FM, Sulpice R, Araújo WL, Zsögön A, Fernie AR, Nunes-Nesi A. Metabolic shifts during fruit development in pungent and non-pungent peppers. Food Chemistry,  000, 131850

3. Henschel JM, Brito FAL, Pimenta TM, Picoli EAT, Zsögön A, Ribeiro DM. Irradiance-regulated biomass allocation in Raphanus sativus plants depends on gibberellin biosynthesis. Plant Physiology and Biochemistry, 000, 1-0

4. Nascimento VL, Pereira AM, Siqueira JA, Pereira AS, Silva VF, Costa LC, Ribeiro DM, Zsögön A, Nunes-Nesi A, Araújo WL. Exogenous ethylene reduces growth via alterations in central metabolism and cell wall composition in tomato (Solanum lycopersicum). Journal of Plant Physiology, 000, 153460

5. Gasparini K, Da Silva MF, Costa LC, Martins SCV, Ribeiro DM, Peres LEP, Zsögön A. The Lanata trichome mutation increases stomatal conductance and reduces leaf temperature in tomato. Journal of Plant Physiology, 000, 153413

6. Gasparini K, Moreira JDR, Peres LEP, Zsögön A. De novo domestication of wild species to create crops with increased resilience and nutritional value. Current Opinion in Plant Biology, 60, 102006

7. Silva LDA, Omena-Garcia RP, Condori-Apfata JA, Costa PMDA, Silva NM, Damatta FM, Zsögön A, Araújo WL, Picoli EADT, Sulpice R, Nunes-Nesi A. Specific leaf area is modulated by nitrogen via changes in primary metabolism and parenchymal thickness in pepper. Planta, 253

2020

1. Bouzroud S, Gasparini K, Hu G, Barbosa MAM, Rosa BL, Fahr M, Bendaou N, Bouzayen M, Zsögön A, Smouni A, Zouine M (2020) Down regulation and loss of AUXIN RESPONSE FACTOR 4 function using CRISPR/Cas9 alters plant growth, stomatal function and improves tomato tolerance to salinity and osmotic stress. Genes 11: 272

2. Batista-Silva W, da Fonseca-Pereira P, Martins AO, Zsögön A, Nunes-Nesi A, Araújo W (2020) Engineering improved photosynthesis in the era of synthetic biology. Plant Communications 1

3. Brito FAL, Pimenta T, Henschel J, Martins SVM, Zsögön A, Ribeiro DM (2020) Elevated CO₂ improves assimilation rate and growth of tomato plants under progressively higher soil salinity by decreasing abscisic acid and ethylene levels. Environmental and Experimental Botany 176, 105500

4. Malheiros RSP, Gonçalves FCM, Brito FAL, Zsögön A, Ribeiro DM (2020) Selenomethionine induces oxidative stress and modifies growth in rice (Oryza sativa L.) seedlings through effects on hormone biosynthesis and primary metabolism. Ecotoxicology and Environmental Safety 189: 109942

5. Robledo JM, Medeiros D, Vicente MH, Azevedo AA, Thompson AJ, Peres LEP, Ribeiro DM, Araújo WL, Zsögön A (2020) Control of water-use efficiency by florigen. Plant Cell and Environment 43:76-86

6. Nascimento VL, Pereira AM, Pereira AS, Silva VF, Costa LC, Bastos CEA, Ribeiro DM, Caldana C, Sulpice R, Nunes-Nesi A, Zsögön A, Araujo, WL. Physiological and metabolic bases of increased growth in the tomato ethylene-insensitive mutant Never ripe: extending ethylene signaling functions. Plant Cell Reports

2019

1. de Ávila Silva L, Condori-Apfata JA, de Almeida Costa PM, Brandão Martino P, Azevedo Tavares AC, Marques Marcelino M, Januário Raimundi SC, de Toledo Piccoli EA, Araújo WL, Zsögön A, Sulpice R, Nunes-Nesi A (2019) Source strength modulates fruit set by starch turnover and export of both sucrose and amino acids in pepper. Plant and Cell Physiology 60: 2319-2330

2. Gasparini K, Costa LC, Brito FAL, Pimenta TM, Cardoso FB, Araújo WL, Zsögön A, Ribeiro DM (2019) Elevated CO₂ induces age-dependent restoration of growth and metabolism in gibberellin-deficient plants. Planta 250: 1147-1161         

3. Malheiros RSP, Costa LC, Ávila RT, Pimenta TM, Teixeira LS, Brito FAL, Zsögön A, Araújo WL, Ribeiro DM (2019) Selenium downregulates auxin and ethylene biosynthesis in rice seedlings to modify primary metabolism and root architecture. Planta 250: 333-345

4. de Ávila Silva L, Condori-Apfata JA, Marcelino MM, Tavares ACA, Raimundi SCJ, Martino PB, Araújo WL, Zsögön A, Sulpice R, Nunes-Nesi A (2019) Nitrogen differentially modulates photosynthesis, carbon allocation and yield related traits in two contrasting Capsicum chinense cultivars. Plant Science 283: 224–237

5. Naves ER, Silva LA, Sulpice R, Araújo WL, Nunes-Nesi A, Peres LEP, Zsögön A (2019) Capsaicinoids: pungency beyond Capsicum. Trends in Plant Science 24: 109-120

6. Barbosa MAM, Chitwood DH, Azevedo AA, Araújo WL, Ribeiro DM, Peres LEP, Martins SCV, Zsögön A (2019) Bundle sheath extensions affect leaf structural and physiological plasticity in response to irradiance. Plant Cell and Environment 42: 1575-1589

2018

1. Batista-Silva W, Medeiros DB, Rodrigues-Salvador A, Daloso DM, Omena-Garcia RP, Oliveira FS, Pino LE, Peres LEP, Nunes-Nesi A, Fernie AR, Zsögön A, Araújo WL (2018) Modulation of auxin signalling through DIAGETROPICA and ENTIRE differentially affects tomato plant growth via changes in photosynthetic and mitochondrial metabolism. Plant Cell and Environment 42: 448-465

2. Batista-Silva W, Nascimento VL, Medeiros DB, Nunes-Nesi A, Ribeiro DM, Zsögön A, Araújo WL (2018) Modifications in organic acid profiles during fruit development: Correlation or causation? Frontiers in Plant Science 9: 1689

3. Zsögön A, Čermák, Naves ER, Notini MM, Edel KH, Weinl S, Freschi L, Voytas D, Kudla J, Peres LEP (2018) De novo domestication of wild tomato using genome editing. Nature Biotechnology 36: 1211-1216

4. Silva NCQ, de Souza GA, Pimenta TM, Brito FAL, Picoli EAT, Zsögön A, Ribeiro DM (2018) Salt stress inhibits germination of Stylosanthes humilis seeds through abscisic acid accumulation and associated changes in ethylene production. Plant Physiology and Biochemistry 130: 399–407

5. Silva WB, Vicente MH, Robledo KJM, Reartes DS, Ferrari RC, Bianchetti R, Araújo WL, Freschi L, Peres LEP, Zsögön A (2018) SELF-PRUNING acts synergistically with DIAGEOTROPICA to guide auxin responses and proper growth form. Plant Physiology 176: 2904–2916

6. Ribeiro RR, Costa LC, Medina EF, Araújo WL, Zsögön A, Ribeiro DM (2018) Ethylene coordinates seed germination behavior in response to low soil pH in Stylosanthes humilis. Plant and Soil 425: 87-100

7. Brito FAL, Costa LC, Gasparini K, Pimenta TM, Araújo WL, Zsögön A, Ribeiro DM (2018) Low soil pH modulates ethylene biosynthesis and germination response of Stylosanthes humilis seeds. Plant Signaling and Behavior 13: e1460186

2017

1. Orr DJ, Pereira AM, da Fonseca PP, Pereira-Lima I, Zsögön A, Araújo WL (2017) Engineering photosynthesis: progress and perspectives. F1000 Research 6:1891-1895

2. Vendemiatti E, Zsögön A, Silva GFF, de Jesus FA, Cutri L, Figueiredo CAR, Tanaka FAO, Nogueira FTS, Peres LEP (2017) Loss of type-IV glandular trichomes is a heterochronic trait in tomato and can be reverted by promoting juvenility. Plant Science 259:35-47

3. Zsögön A, Čermák T, Voytas D, Peres LEP (2017) Genome editing as a tool to achieve the crop ideotype and de novo domestication of wild relatives.  Plant Science 256: 120-130

2016

1. Nunes-Nesi A, Nascimento V de L, de Oliveira Silva FM, Zsögön A, Araújo WL, Sulpice R (2016) Natural genetic variation for morphological and molecular determinants of plant growth and yield. Journal of Experimental Botany 67:2989-3001.